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1.
Environ Sci Technol ; 57(40): 15014-15025, 2023 10 10.
Artigo em Inglês | MEDLINE | ID: mdl-37756318

RESUMO

Intensive mariculture activities result in eutrophication and enhance coastal deoxygenation. Deoxygenation profoundly influences nitrate reduction processes and further the fate of nitrogen (N) in coastal systems. Herein, 15N isotope labeling, real-time PCR, and high-throughput sequencing techniques were jointly used to investigate the participation and seasonal dynamics of sediment nitrate reduction pathways and the succession of functional microbial communities during the development of seasonal deoxygenation in a coastal aquaculture zone. Denitrification dominated benthic nitrate reduction (46.26-80.91%). Both denitrification and dissimilatory nitrate reduction to ammonium were significantly enhanced by summer deoxygenation (dissolved oxygen levels fell to 2.94 ± 0.28 mg L-1), while anammox remained unchanged. The abundance of the nitrous oxide reductase gene nosZ increased during deoxygenation. The community of the nosZ gene was sensitive to deoxygenation, with Azospirillum and Ruegeria accounting for the majority. Pelobacter was overwhelming in the nrfA gene (encoding dissimilatory nitrite reductase) community, which was less affected by deoxygenation. The variations of benthic nitrate reduction processes were driven by bottom water oxygen combined with temperature, chlorophyll a, and microbial gene abundances and community compositions. Our results implicated that seasonal oxygen-deficient zones could be substantial N sinks of coastal ecosystems and important for N balance. Effective management measures need to be developed to avoid further exacerbation of coastal deoxygenation and maintain the sustainable development of mariculture.


Assuntos
Compostos de Amônio , Microbiota , Nitratos/análise , Clorofila A , Estações do Ano , Compostos Orgânicos , Nitrogênio/análise , Oxigênio , Desnitrificação
2.
J Dairy Sci ; 106(11): 7613-7629, 2023 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-37641263

RESUMO

Acetate supplementation increases milk fat production, but interactions with animal-related factors have not been investigated. The objective of this study was to characterize the interaction of acetate supplementation with parity and genetic potential for milk fat synthesis including the DGAT1 K232A polymorphism (AA and KA genotypes). In total, 47 primiparous and 49 multiparous lactating cows were used in 2 blocks in a crossover design. The basal diet was formulated to have a low risk of biohydrogenation-induced milk fat depression and had 32.8% and 32.0% neutral detergent fiber and 21.7% and 23.6% starch [all on a dry matter (DM) basis] in block 1 and 2, respectively. The control treatment received the basal diet, and the acetate supplementation treatment included anhydrous sodium acetate supplemented to the basal diet at 3.2% and 3.1% of DM of the diet for block 1 and 2, respectively (targeting 10 mol/d of acetate). The DGAT1 genotype frequency of the experimental cows was 45% AA and 51% KA, with 4% cows with either a KK or unimputable genotype. Acetate supplementation increased DM intake (DMI) in KA multiparous cows, but acetate did not change DMI in AA multiparous or primiparous cows of either genotype. Acetate supplementation increased the frequency of meals by 8% and decreased the length of each meal by ∼5 min compared with control. There was no effect of acetate on milk yield. Acetate supplementation increased milk fat yield and concentration by 117 g/d and 0.31 percentage units, respectively, regardless of DGAT1 polymorphism or parity. The increase in milk fat yield was mostly due to an increase in yield of 16C mixed-sourced fatty acids, suggesting that acetate supplementation drives mammary de novo synthesis toward completion. Response to acetate supplementation was not related to genomic predicted transmitting ability of milk fat concentration and yield or to pretrial milk fat percent and yield, suggesting that acetate increases milk fat production regardless of genetic potential for milk fat yield and level of milk fat synthesis. Interestingly, analyzing the temporal effect on the interaction between treatment and DGAT1 polymorphism on milk fat yield suggested that DGAT1 polymorphism may affect the short-term response to acetate supplementation during the first ≤7 d on treatment. Acetate supplementation also increased plasma ß-hydroxybutyrate concentration and decreased plasma glucose concentration. In conclusion, acetate supplementation consistently increased milk fat synthesis regardless of parity or genetic potential for milk fat synthesis.


Assuntos
Lactação , Leite , Gravidez , Feminino , Bovinos , Animais , Leite/metabolismo , Lactação/fisiologia , Dieta/veterinária , Suplementos Nutricionais , Ácidos Graxos/metabolismo , Acetatos/farmacologia , Comportamento Alimentar , Paridade , Ração Animal/análise
3.
Huan Jing Ke Xue ; 43(10): 4735-4744, 2022 Oct 08.
Artigo em Chinês | MEDLINE | ID: mdl-36224159

RESUMO

The emerging environment-associated issues due to the overuse of inorganic fertilizers in agricultural production are of global concern despite the benefit of high yields. Eco-friendly organic materials with the capability to fertilize soil are encouraged to partially replace mineral fertilizer. The N cycle conducted by soil microorganisms is the most important biogeochemical process, dictating the N bioavailability in farmland ecosystems; however, little is known about how organic material amendment affects soil microbial N cycling under chemical fertilizer reduction. Hence, a fixed field trial with five fertilization practices was implemented to experimentally alter microorganisms essential for the soil N cycle, including conventional chemical fertilization (NPK), reduced chemical fertilization (NPKR), reduced chemical fertilization plus straw (NPKRS), reduced chemical fertilization plus organic fertilizer (NPKRO), and reduced chemical fertilization plus organic fertilizer and straw (NPKROS). The microbial N-cycling gene abundances and associated N-converting genetic potentials were evaluated using real-time quantitative PCR. In comparison to conventional chemical fertilization (NPK), organic addition significantly increased the amounts of heterotrophic microbes involved in organic N decomposition, N fixation, and N reduction; however, it reduced autotrophic microbes performing ammonia oxidization. Consequently, the overall proportion of heterotrophic microbes was remarkably enhanced, and the autotrophic proportion was correspondingly lowered. The fertilization practice shift significantly improved N fixation and gaseous N emission potentials, whereas it suppressed NO3- leaching potential. A significant discrepancy among five fertilization treatments was observed based on functional gene abundances (PERMANOVA, P=0.002),as revealed by distance-based redundancy analysis (db-RDA), with NH4+ as the dominant factor. Organic fertilizer addition was beneficial for heterotrophic N functional microorganisms, with simultaneous input of straw augmenting such an effect. Pearson's correlation analysis revealed that N storage and gaseous N emission potentials were both substantially negatively correlated with NH4+; NO3- leaching potential was notably negatively associated with SOC and TN but significantly related to NH4+. In conclusion, chemical fertilizer reduction combined with organic material amendments, a main fertilization recommendation, may enhance soil N storage, diminish N loss by leaching, and mitigate the environmental risk of N2O emission. This deserves attention considering that healthy and sustainable agricultural soil environment can be cultivated from the view of microbial N-cycling.


Assuntos
Fertilizantes , Solo , Agricultura , Amônia , China , Ecossistema , Nitrogênio , Solo/química , Microbiologia do Solo
4.
Front Plant Sci ; 13: 832304, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35251103

RESUMO

Increasing cassava production could mitigate one of the global food insecurity challenges by providing a sustainable food source. To improve the yield potential, physiological strategies (i.e., the photosynthetic efficiency, source-to-sink carbon partitioning, and intracellular carbon metabolism) can be applied in breeding to screen for superior genotypes. However, the influences of source-to-sink carbon partitioning and carbon metabolism on the storage root development of cassava are relatively little understood. We hypothesized that carbon partitioning and utilization vary modulating the distinctive storage root yields of high and low-yielding cassava varieties, represented in this study by varieties Kasetsart 50 (KU50) and Hanatee (HN), respectively. Plant growth, photosynthesis measurements, soluble sugars, and starch contents of individual tissues were analyzed at different developmental stages. Also, the diurnal patterns of starch accumulation and degradation in leaves were investigated through iodine staining. Despite a comparable photosynthetic rate, KU50 grew better and yielded greater storage roots than HN. Interestingly, both varieties differed in their carbon partitioning strategies. KU50 had a high photosynthetic capacity and was better efficient in converting photoassimilates to carbon substrates and allocating them to sink organs for their growth. In contrast, HN utilized the photoassimilates at a high metabolic cost, in terms of respiration, and inefficiently allocated carbon to stems rather than storage roots. These results highlighted that carbon assimilation and allocation are genetic potential characteristics of individual varieties, which in effect determine plant growth and storage root yield of cassava. The knowledge gained from this study sheds light on potential strategies for developing new high-yielding genotypes in cassava breeding programs.

5.
Breed Sci ; 71(4): 444-455, 2021 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-34912171

RESUMO

According to Fisher's principles, an experimental field is typically divided into multiple blocks for local control. Although homogeneity is supposed within a block, this assumption may not be practical for large blocks, such as those including hundreds of plots. In line evaluation trials, which are essential in plant breeding, field heterogeneity must be carefully treated, because it can cause bias in the estimation of genetic potential. To more accurately estimate genotypic values in a large field trial, we developed spatial kernel models incorporating genome-wide markers, which consider continuous heterogeneity within a block and over the field. In the simulation study, the spatial kernel models were robust under various conditions. Although heritability, spatial autocorrelation range, replication number, and missing plots directly affected the estimation accuracy of genotypic values, the spatial kernel models always showed superior performance over the classical block model. We also employed these spatial kernel models for quantitative trait locus mapping. Finally, using field experimental data of bioenergy sorghum lines, we validated the performance of the spatial kernel models. The results suggested that a spatial kernel model is effective for evaluating the genetic potential of lines in a heterogeneous field.

6.
Plant J ; 108(1): 231-243, 2021 10.
Artigo em Inglês | MEDLINE | ID: mdl-34309934

RESUMO

Variation in grain size, a major determinant of grain yield and quality in cereal crops, is determined by both the plant's genetic potential and the available assimilate to fill the grain in the absence of stress. This study investigated grain size variation in response to variation in assimilate supply in sorghum using a diversity panel (n = 837) and a backcross-nested association mapping population (n = 1421) across four experiments. To explore the effects of genetic potential and assimilate availability on grain size, the top half of selected panicles was removed at anthesis. Results showed substantial variation in five grain size parameters with high heritability. Artificial reduction in grain number resulted in a general increase in grain weight, with the extent of the increase varying across genotypes. Genome-wide association studies identified 44 grain size quantitative trait locus (QTL) that were likely to act on assimilate availability and 50 QTL that were likely to act on genetic potential. This finding was further supported by functional enrichment analysis and co-location analysis with known grain number QTL and candidate genes. RNA interference and overexpression experiments were conducted to validate the function of one of the identified gene, SbDEP1, showing that SbDEP1 positively regulates grain number and negatively regulates grain size by controlling primary branching in sorghum. Haplotype analysis of SbDEP1 suggested a possible role in racial differentiation. The enhanced understanding of grain size variation in relation to assimilate availability presented in this study will benefit sorghum improvement and have implications for other cereal crops.


Assuntos
Locos de Características Quantitativas/genética , Sorghum/genética , Produtos Agrícolas , Grão Comestível/genética , Grão Comestível/crescimento & desenvolvimento , Estudo de Associação Genômica Ampla , Genótipo , Haplótipos , Fenótipo , Sementes/genética , Sementes/crescimento & desenvolvimento , Sorghum/crescimento & desenvolvimento
7.
Animals (Basel) ; 11(3)2021 Mar 18.
Artigo em Inglês | MEDLINE | ID: mdl-33803763

RESUMO

Breeding for polled animals is deemed the most practical solution to eradicate horns naturally and circumvent management costs and risks on health and welfare. However, there has been a historical reluctance by some farmers to select polled animals due to perceived lower productivity of their calves. This study has compared estimated breeding values (EBVs) between horned and polled animals (N = 2,466,785) for 12 production and carcass traits to assess historical (before 2000) and recent (2000-2018) genetic implications of poll breeding. Older generations of the polled animals in most breeds had significantly lower (Bonferroni-corrected p = 0.05) genetic merits for live (birth to maturity) and carcass weights, milk, meat quality, and fat content traits. Substantial gains of genetic potential were achieved during 2000 to 2018 in each breed, such that polled animals have significantly improved for the majority of traits studied. Generally, polled cohorts showed advantageous EBVs for live and carcass weights irrespective of the lower birth weights in some breeds. While Polled Brahman showed inferior production parameters, the poll genetics' effect size (d) and correlation (r) were very small on recent birth weight (d = -0.30, r = -0.08), 200 days (-0.19, -0.05), 400 days (-0.06, -0.02), 600 days (-0.05, -0.01), mature cow live weight (-0.08, -0.02), and carcass weight (-0.19, -0.05). In conclusion, although there is some evidence that historical selection for polled breeding animals may have reduced productivity, there is strong evidence that more recent selection for polled genotypes in the breeds studied has not resulted in any adverse effects on genetic merit.

8.
Euphytica ; 217(2): 30, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33603249

RESUMO

The objective of this study was to determine genetic potentials in eight sets of cowpea lines for grain yield (GY), hundred seed weight (HSDWT) and days to 50% flowering (DT50FL). A total of 614 F6 genotypes constituting the sets, grouped by maturity, were evaluated across two locations in Northern Nigeria, in an alpha lattice design, two replications each. Data were recorded on GY, HSDWT and DT50FL.Variance components, genotypic coefficient of variation (GCV), and genetic advance (GA) were used to decode the magnitude of genetic variance within and among sets. Genetic usefulness (Up) which depends on mean and variance to score the genetic merits in historically bi-parental populations was applied to groups of breeding lines with mixed parentage. Principal component analysis (PCA) was used to depict contribution of traits to observed variations. GY and DT50FL explained the variance within and between sets respectively. Genotypes were significantly different, although genotype-by-location and set-by-location interaction effects were also prominent. Genetic variance (δ2 G) and GCV were high for GY in Prelim2 (δ2 G = 45,897; GCV = 19.58%), HSDWT in Prelim11 (δ2 G = 7.137; GCV = 17.07%) and DT50F in Prelim5 (δ2 G = 4.54; GCV = 4.4%). Heritability varied among sets for GY (H = 0.21 to 0.57), HSDWT (H = 0.76 to 0.93) and DT50FL (H = 0.20 to 0.81). GA and percentage GA (GAPM) were high for GY in Prelim2 (GAPM = 24.59%; GA = 269.05Kg/ha), HSDWT in Prelim11 (GAPM = 28.54%; GA = 4.47 g), and DT50F in Prelim10 (GAPM = 6.49%; GA = 3.01 days). These sets also registered high values of genetic usefulness, suggesting potential application in non-full sib populations. These approaches can be used during preliminary performance tests to reinforce decisions in extracting promising lines and choose among defined groups of lines. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at (10.1007/s10681-020-02763-y).

9.
FEMS Microbiol Ecol ; 97(2)2021 01 26.
Artigo em Inglês | MEDLINE | ID: mdl-33316049

RESUMO

The vertical structuring of methanotrophic communities and its genetic controllers remain understudied in the water columns of oxygen-stratified lakes. Therefore, we used 16S rRNA gene sequencing to study the vertical stratification patterns of methanotrophs in two boreal lakes, Lake Kuivajärvi and Lake Lovojärvi. Furthermore, metagenomic analyses were performed to assess the genomic characteristics of methanotrophs in Lovojärvi and the previously studied Lake Alinen Mustajärvi. The methanotroph communities were vertically structured along the oxygen gradient. Alphaproteobacterial methanotrophs preferred oxic water layers, while Methylococcales methanotrophs, consisting of putative novel genera and species, thrived, especially at and below the oxic-anoxic interface and showed distinct depth variation patterns, which were not completely predictable by their taxonomic classification. Instead, genomic differences among Methylococcales methanotrophs explained their variable vertical depth patterns. Genes in clusters of orthologous groups (COG) categories L (replication, recombination and repair) and S (function unknown) were relatively high in metagenome-assembled genomes representing Methylococcales clearly thriving below the oxic-anoxic interface, suggesting genetic adaptations for increased stress tolerance enabling living in the hypoxic/anoxic conditions. By contrast, genes in COG category N (cell motility) were relatively high in metagenome-assembled genomes of Methylococcales thriving at the oxic-anoxic interface, which suggests genetic adaptations for increased motility at the vertically fluctuating oxic-anoxic interface.


Assuntos
Lagos , Oxigênio , Metano , Filogenia , RNA Ribossômico 16S/genética , Água
10.
Environ Res ; 189: 109965, 2020 10.
Artigo em Inglês | MEDLINE | ID: mdl-32739685

RESUMO

Exposure to airborne substances harmful to health during pre- and postnatal stage may significantly affect the correct development of organs and systems. Many studies analyze the relationship between air quality and health, but data on the impact of air pollution on human biological development are scanty. The aim of the study was to assess the relationships between adult body height and air quality in the place of residence during childhood and adolescence. The parameters measured included absolute stature (cm) and relative stature defined as a percentage of mean stature of both parents. The analysis covered data collected from 1257 women. Subject's height was measured. Data on parental height were obtained using a questionnaire. The level of each analysed environmental pollution in the place of residence during childhood and adolescence: particulate matter (PM10, PM2.5), sulphur dioxide (SO2), nitric dioxide (NO2) and benzene (C6H6) in the place of residence during childhood and adolescence was determined on the basis of the data made available by the Polish Chief Inspectorate for Environmental Protection. Results of our study show that mean stature decreases with growing air pollution level. Significant differences were observed both in absolute stature and relative stature (expressed as percentage of mean stature of both parents) depending on PM10 and PM2.5 levels in place of residence during childhood and adolescence as well as on the total index of air quality. The differences remain statistically significant also after adjustment for the degree of urbanisation of the place of residence and factors related to socio-economic status. Our findings suggest that air pollution level in the place of residence during childhood and adolescence has significant impact on the children growth, potentially leading to worse health status later in life.


Assuntos
Poluentes Atmosféricos , Poluição do Ar , Adolescente , Adulto , Poluentes Atmosféricos/análise , Criança , Exposição Ambiental/análise , Feminino , Humanos , Dióxido de Nitrogênio , Material Particulado/análise , Polônia
11.
Plants (Basel) ; 8(10)2019 Sep 26.
Artigo em Inglês | MEDLINE | ID: mdl-31561516

RESUMO

African rice (Oryza glaberrima) has a pool of genes for resistance to diverse biotic and abiotic stresses, making it an important genetic resource for rice improvement. African rice has potential for breeding for climate resilience and adapting rice cultivation to climate change. Over the last decade, there have been tremendous technological and analytical advances in genomics that have dramatically altered the landscape of rice research. Here we review the remarkable advances in knowledge that have been witnessed in the last few years in the area of genetics and genomics of African rice. Advances in cheap DNA sequencing technologies have fuelled development of numerous genomic and transcriptomic resources. Genomics has been pivotal in elucidating the genetic architecture of important traits thereby providing a basis for unlocking important trait variation. Whole genome re-sequencing studies have provided great insights on the domestication process, though key studies continue giving conflicting conclusions and theories. However, the genomic resources of African rice appear to be under-utilized as there seems to be little evidence that these vast resources are being productively exploited for example in practical rice improvement programmes. Challenges in deploying African rice genetic resources in rice improvement and the genomics efforts made in addressing them are highlighted.

12.
Horm Res Paediatr ; 88(3-4): 237-243, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28715814

RESUMO

BACKGROUND: Childhood obesity is a major health concern. Excess adiposity during childhood affects growth and puberty. Our aim was to assess whether genetic adult height is compromised in adolescents with obesity. METHODS: In a retrospective study of 190 obese patients followed at our Pediatric Endocrinology Institute, adult height and delta height (the difference between adult height and mid-parental height) were compared to those of 150 healthy age-matched normal-weight controls. Review of medical files yielded the relevant clinical and anthropometric data of patients, controls, and parents. RESULTS: Of the 190 obese adolescents, 150 were morbidly obese. The median adult height of morbidly obese males was 174.3 cm, of obese males 174 cm, and of normal-weight males 176 cm (p = 0.025). Delta height of morbidly obese males was -0.5 cm, of obese males -0.8 cm, and of normal-weight males, 3 cm (p < 0.0001). The median adult height of morbidly obese females was 161.3 cm, of obese females 162.8 cm, and of normal-weight females 162 cm (p = 0.37). Delta height of morbidly obese females was -1.85 cm, of obese females -0.95 cm, and of normal-weight females 0.7 cm (p = 0.019). Impairment of potential genetic height was not associated with obesity-related comorbidities. CONCLUSION: Adolescents with obesity showed impairment of potential genetic adult height as compared to that of normal-weight subjects.


Assuntos
Estatura/fisiologia , Índice de Massa Corporal , Obesidade Pediátrica/fisiopatologia , Adolescente , Adulto , Feminino , Humanos , Masculino , Estudos Retrospectivos , Fatores Sexuais
13.
Poult Sci ; 96(9): 3031-3038, 2017 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-28633351

RESUMO

Accurately establishing the relationships among individuals lays the foundation for genetic analyses such as genome-wide association studies and identification of selection signatures. Of particular interest to the poultry industry are estimates of genetic merit based on molecular data. These estimates can be commercially exploited in marker-assisted breeding programs to accelerate genetic improvement. Here, we test the utility of a new method we have recently developed to estimate animal relatedness and applied it to genetic parameter estimation in commercial broilers. Our approach is based on the concept of data compression from information theory. Using the real-world compressor gzip to estimate normalized compression distance (NCD) we have built compression-based relationship matrices (CRM) for 988 chickens from 4 commercial broiler lines-2 male and 2 female lines. For all pairs of individuals, we found a strong negative relationship between the commonly used genomic relationship matrix (GRM) and NCD. This reflects the fact that "similarity" is the inverse of "distance." The CRM explained more genetic variation than the corresponding GRM in 2 of 3 phenotypes, with corresponding improvements in accuracy of genomic-enabled predictions of breeding value. A sliding-window version of the analysis highlighted haplotype regions of the genome apparently under selection in a line-specific manner. In the male lines, we retrieved high population-specific scores for IGF-1 and a cognate receptor, INSR. For the female lines, we detected an extreme score for a region containing a reproductive hormone receptor (GNRHR). We conclude that our compression-based method is a valid approach to established relationships and identify regions under selective pressure in commercial lines of broiler chickens.


Assuntos
Criação de Animais Domésticos/métodos , Cruzamento , Galinhas/genética , Variação Genética , Animais , Compressão de Dados , Feminino , Haplótipos , Masculino , Fenótipo
14.
Sci Total Environ ; 587-588: 389-398, 2017 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-28249753

RESUMO

The taxonomic and functional diversity of three different biological reactors (fluidized bed reactor, FBR; up-flow anaerobic sludge blanket reactor, UASB; and expanded granular sludge bed reactor, EGSB) used for commercial laundry wastewater treatment was investigated using metagenome shotgun sequencing. Metagenomes were sequenced on the Illumina Hiseq platform and were analyzed using MG-RAST, STAMP and PAST software. The EGSB and UASB reactors were more closely related based on taxonomic and functional profiles, likely due to similar granular sludge and procedures adopted to ensure anaerobic conditions. The EGSB and UASB reactors showed a predominance of methanogens and genes related to methanogenesis, with a prevalence of the acetoclastic pathway, in addition to the peripheral and central O2-independent pathways for aromatic compound degradation. By contrast, FBR showed a dominance of aerobic microbiota and pathways for O2-dependent aromatic compound degradation. Therefore, although the reactors showed similar surfactant removal levels, the microbial composition, functional diversity and aromatic compound degradation pathways were significantly distinct.

15.
Microbiologyopen ; 6(3)2017 06.
Artigo em Inglês | MEDLINE | ID: mdl-28229558

RESUMO

The 16S rRNA gene amplicon and whole-genome shotgun metagenomic (WGSM) sequencing approaches were used to investigate wide-spectrum profiles of microbial composition and metabolic diversity from a full-scale UASB reactor applied to poultry slaughterhouse wastewater treatment. The data were generated by using MiSeq 2 × 250 bp and HiSeq 2 × 150 bp Illumina sequencing platforms for 16S amplicon and WGSM sequencing, respectively. Each approach revealed a distinct microbial community profile, with Pseudomonas and Psychrobacter as predominant genus for the WGSM dataset and Clostridium and Methanosaeta for the 16S rRNA gene amplicon dataset. The virome characterization revealed the presence of two viral families with Bacteria and Archaea as host, Myoviridae, and Siphoviridae. A wide functional diversity was found with predominance of genes involved in the metabolism of acetone, butanol, and ethanol synthesis; and one-carbon metabolism (e.g., methanogenesis). Genes related to the acetotrophic methanogenesis pathways were more abundant than methylotrophic and hydrogenotrophic, corroborating the taxonomic results that showed the prevalence of the acetotrophic genus Methanosaeta. Moreover, the dataset indicated a variety of metabolic genes involved in sulfur, nitrogen, iron, and phosphorus cycles, with many genera able to act in all cycles. BLAST analysis against Antibiotic Resistance Genes Database (ARDB) revealed that microbial community contained 43 different types of antibiotic resistance genes, some of them were associated with growth chicken promotion (e.g., bacitracin, tetracycline, and polymyxin).


Assuntos
Matadouros , Reatores Biológicos/microbiologia , Biota , Águas Residuárias , Purificação da Água , Animais , Archaea/classificação , Archaea/genética , Bactérias/classificação , Bactérias/genética , Bacteriófagos/classificação , Bacteriófagos/genética , Galinhas , Análise por Conglomerados , DNA Arqueal/química , DNA Arqueal/genética , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Metagenômica , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
16.
Ciênc. rural ; 46(6): 1076-1081, June 2016. tab
Artigo em Inglês | LILACS | ID: lil-779837

RESUMO

ABSTRACT: The purpose of this study was to assess the levels of available phosphorus (AP) in the diet of growing pigs selected for lean deposition on the hematological, biochemical, and bone performance parameters. A total of 64 commercial hybrid pigs (32 castrated males and 32 females; mean initial weight: 23.31±2.4kg; age: 55-90 days) were used. Animals were distributed into a randomized block design with four treatments, eight replicates, and two animals (one male and one female) per experimental unit. The treatments consisted of a basal diet and another three diets, which were obtained by supplementing the basal diet with dicalcium phosphate replacing the inert phosphate, resulting in four diets with 0.100, 0.180, 0.260, and 0.340% of available phosphorus. The levels of available phosphorus quadratically influenced the daily weight gain, feed consumption, and feed conversion, which increased up to the estimated levels 0.331; 0.330, and 0.302% of available phosphorus. Levels of phosphorus showed no influence on the hematological parameters, which remained within the reference values. Levels of available phosphorus increased linearly the ash and phosphorus contents in the metacarpal bone and decreased linearly the alkaline phosphatase activity. Levels of available phosphorus (0.331 and 0.302%, corresponding to a daily intake of 5.73 and 5.18g d-1) provided respectively the best results for weight gain and feed conversion in pigs with high genetic potential, without change in hematological parameters.


RESUMO: O objetivo deste estudo foi avaliar níveis de fósforo disponível em rações para suínos em crescimento, selecionados para deposição de carne, sobre os parâmetros de desempenho, hematológico, bioquímico e ósseo. Foram usados 64 suínos híbridos comerciais (32 machos castrados e 32 fêmeas; peso médio inicial: 23,31±2,4 kg; idade: 55-90 dias). Os animais foram distribuídos em blocos casualizados com quatro tratamentos, oito repetições e dois animais (um macho e uma fêmea) por unidade experimental. Os tratamentos consistiram em uma ração basal e em outras três rações, obtidas pela suplementação da ração basal com fosfato bicálcico em substituição ao inerte, resultando em quatro rações com 0,100, 0,180, 0,260, 0,340% de fósforo disponível. Os níveis de fósforo disponível influenciaram de forma quadrática o ganho de peso diário, o consumo de ração e a conversão alimentar, que aumentaram até o nível estimado de 0,331, 0,330 e 0,302% de fósforo disponível, respectivamente. Não houve influência dos níveis de fósforo sobre os parâmetros hematológicos que permaneceram dentro dos valores de referência. Os níveis de fósforo disponível influenciaram de forma linear crescente os teores de cinzas e fósforo no metacarpo dos animais e, de forma decrescente, a atividade da fosfatase alcalina. Os níveis de fósforo disponível, de 0,331 e 0,302%, correspondentes ao consumo diário de 5,73 e 5,18g d-1, proporcionaram, respectivamente, os melhores resultados de ganho de peso e conversão alimentar em suínos de alto potencial genético, sem alterações nos parâmetros hematológicos.

17.
Genet. mol. biol ; 31(1): 98-105, 2008. tab
Artigo em Inglês | LILACS | ID: lil-476158

RESUMO

Soybean is one of the most important crops in Brazil and continuously generates demands for production technologies, such as cultivars resistant to diseases. In recent years, the Asian rust fungus (Phakopsora pachyrhizi Syd. & P. Syd 1914) has caused severe yield losses and the development of resistant cultivars is the best means of control. Understanding the genetic control and estimating parameters associated with soybean (Glycine max) resistance to P. pachyrhizi will provide essential information for cultivar selection. We investigated quantitative genetic control of P. pachyrhizi and estimated parameters associated to soybean yield in the absence and presence of this phytopathogen. Six cultivars and their 15 diallel derived F2 and F3 generations were assessed in experiments carried out in the absence and presence of P. pachyrhizi. The results indicated that soybean yield in the presence and absence of P. pachyrhizi is controlled by polygenes expressing predominantly additive effects that can be selected to develop new cultivars resistant or tolerant to P. pachyrhizi. These cultivars may prove to be a useful and more durable alternative than cultivars carrying major resistance genes.


Assuntos
Soja/genética , Fungos/genética , Ásia , Brasil , Locos de Características Quantitativas
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